NrdJdf.NrdJ.uc0.75_selection.pb.BLOSUM30.bmge.PROTGAMMAAUTO.raxml.bipartitions.nexml (668.33 kB)

NrdJd/NrdJa+b + unclassified NrdJ phylogeny

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posted on 06.07.2017 by Daniel Lundin
Maximum likelihood phylogeny (RAxML; Stamatakis 2014) of representatives of 75% identity clusters of the full diversity of class II ribonucleotide reductases except monomeric, subclass NrdJm. Reliable positions in Probcons (Do et al. 2005) alignment selected with the BMGE algorithm using the BLOSUM30 matrix (Criscuolo & Gribaldo 2010) PROTGAMMAAUTO model.

File can be opened in Dendroscope (http://dendroscope.org/) and other tree viewers.

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