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cells_leftCA1_3-1.csv (2.68 MB)
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cells_leftCA1_3-2.csv (1.76 MB)
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cells_leftCA1_3-3.csv (1.97 MB)
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cells_leftCA1_3-4.csv (2.1 MB)
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cells_leftCA1_4-1.csv (3.05 MB)
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cells_leftCA1_4-3.csv (2.65 MB)
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cells_leftCA1_5-1.csv (3.1 MB)
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cells_leftCA1_5-2.csv (2.21 MB)
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cells_leftCA1_5-3.csv (2.44 MB)
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cells_leftCA1_5-4.csv (2.88 MB)
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cells_leftCA1_7-1.csv (3.58 MB)
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cells_leftCA1_7-2.csv (3.12 MB)
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cells_leftCA1_7-3.csv (2.16 MB)
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cells_leftCA1_7-4.csv (2.72 MB)
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cells_rightCA1_3-1.csv (2.84 MB)
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cells_rightCA1_3-2.csv (2.11 MB)
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cells_rightCA1_3-3.csv (2.23 MB)
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cells_rightCA1_3-4.csv (1.88 MB)
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cells_rightCA1_4-1.csv (2.72 MB)
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cells_rightCA1_4-3.csv (2.91 MB)
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pciSeq files in csv format
dataset
posted on 2019-11-19, 09:51 authored by Xiaoyan QianXiaoyan Qian, Kenneth HarrisKenneth Harris, Thomas Hauling, Dimitris Nicoloutsopoulos, Ana B. Munoz-Manchado, Nathan Skene, Jens Hjerling-Leffler, Mats E. NilssonMats E. NilssonThis figshare data set contains more easily accessible format of files included in figshare dataset https://doi.org/10.6084/m9.figshare.7150760
In situ sequencing (ISS) is a technology to sequence RNA directly inside tissue sections, and probabilistic
cell typing by ISS (pciSeq) method is a method to spatially map single-cell RNA-sequencing defined cell types. (See Associated Publication)
* spots_whole_section files have three columns: genes, X and Y position
* mask files contain polygon coordinates of CA1 regions
* cells files have cell ID, X and Y position of cells in CA1, and sum of probabilities of all assigned reads.
* spots_w_segmentation files contain spot assignment results from pciSeq algorithm.
* celltype files contain cell type assignment results from pciSeq algorithm.
