Andreas Barth

Publications

• Tracking Ca 2+ ATPase intermediates in real time by x-ray solution scattering
• Properties of Biomimetic Artificial Spider Silk Fibers Tuned by PostSpin Bath Incubation
• Quality assessment of recombinant proteins by infrared spectroscopy. Characterisation of a protein aggregation related band of the Ca2+-ATPase
• Effect of lipid bilayer properties on the photocycle of green proteorhodopsin
• Microplastic-mediated transport of PCBs? A depuration study with Daphnia magna
• Inhibition of Protein Synthesis with Highly Soluble Caged Compounds
• Erratum: Formation of two different types of oligomers in the early phase of pH-induced aggregation of the alzheimer aβ(12-28) peptide (Journal of Physical Chemistry B (2012) 116:41 (12389-12397) DOI: 10.1021/jp305015g)
• Microplastic Intake, Its Biotic Drivers, and Hydrophobic Organic Contaminant Levels in the Baltic Herring
• The carbonate/bicarbonate system as a pH indicator for infrared spectroscopy
• Use of creatine kinase to induce multistep reactions in infrared spectroscopic experiments
• Rapid Physicochemical Changes in Microplastic Induced by Biofilm Formation
• Simultaneous fitting of absorption spectra and their second derivatives for an improved analysis of protein infrared spectra
• Ionic Strength Modulation of the Free Energy Landscape of Aβ40 Peptide Fibril Formation
• Computational de novo design of a self-assembling peptide with predefined structure
• Capital regulation with heterogeneous banks – Unintended consequences of a too strict leverage ratio
• Membrane-induced folding of the plant stress dehydrin Lti30
• Heterologous overexpression of a monotopic glucosyltransferase (MGS) induces fatty acid remodeling in Escherichia coli membranes
• Probing the activity of a recombinant Zn2+-transporting P-type ATPase
• Hydrophobic organic contaminants are not linked to microplastic uptake in Baltic Sea herring
• Risk for the release of an enormous amount of nanoplastics and microplastics from partially biodegradable polymer blends
• Use of Creatine Kinase to Induce Multi-Step Reactions in Infrared Spectroscopic Experiments.
• Conformational changes of recombinant Ca2+-ATPase studied by reaction-induced infrared difference spectroscopy.
• Anionic lipid binding to the foreign protein MGS provides a tight coupling between phospholipid synthesis and protein overexpression in Escherichia coli.
• Hydrolysis of the E2P phosphoenzyme of the Ca(2+)-ATPase: a theoretical study.
• Characterization of recombinant antibodies for cancer therapy by infrared spectroscopy.
• Detection of ligand binding to proteins through observation of hydration water.
• Formation of two different types of oligomers in the early phase of pH-induced aggregation of the Alzheimer Aβ(12-28) peptide.
• Coumarin-based octopamine phototriggers and their effects on an insect octopamine receptor.
• Vibrational coupling between helices influences the amide I infrared absorption of proteins: application to bacteriorhodopsin and rhodopsin.
• Optimization of Model Parameters for Describing the Amide I Spectrum of a Large Set of Proteins.
• Influence of the molecular environment on phosphorylated amino acid models: a density functional theory study.
• The allosteric effect of fructose bisphosphate on muscle pyruvate kinase studied by infrared spectroscopy.
• Effects of ions on ligand binding to pyruvate kinase: mapping the binding site with infrared spectroscopy.
• Simulation of the amide I absorption of stacked β-sheets.
• Quantifying bond distortions in transient enzyme species by a combination of density functional theory calculations and time-resolved infrared difference spectroscopy. Implications for the mechanism of dephosphorylation of the sarcoplasmic reticulum Ca2+-ATPase (SERCA1a)
• 13C- and 15N-labeling of amyloid-β and inhibitory peptides to study their interaction via nanoscale infrared spectroscopy
• The amyloid-inhibiting NCAM-PrP peptide targets Aβ peptide aggregation in membrane-mimetic environments
• Abundance and composition of near surface microplastics and plastic debris in the Stockholm Archipelago, Baltic Sea
• Pushing the detection limit of infrared spectroscopy for structural analysis of dilute protein samples
• Simultaneous acquisition of infrared, fluorescence and light scattering spectra of proteins: direct evidence for pre-fibrillar species in amyloid fibril formation
• Amyloid β-peptides 1–40 and 1–42 form oligomers with mixed β-sheets
• Insight into the internal structure of amyloid-β oligomers by isotope-edited Fourier transform infrared spectroscopy
• Correlations between the structure and the vibrational spectrum of the phosphate group. Implications for the analysis of an important functional group in phosphoproteins
• The Amide I Spectrum of Proteins—Optimization of Transition Dipole Coupling Parameters Using Density Functional Theory Calculations
• Correction to “The Amide I Spectrum of Proteins—Optimization of Transition Dipole Coupling Parameters Using Density Functional Theory Calculations”
• Structure–Function Relationship of Artificial Spider Silk Fibers Produced by Straining Flow Spinning
• On the Secondary Structure of Silk Fibroin Nanoparticles Obtained Using Ionic Liquids: An Infrared Spectroscopy Study
• Direct Quantification by Infrared Spectroscopy of Drug Loading Content in Polymeric Nanoparticles
• Direct Quantification of Drug Loading Content in Polymeric Nanoparticles by Infrared Spectroscopy
• Characterization of Homogeneous and Heterogeneous Amyloid-β42 Oligomer Preparations with Biochemical Methods and Infrared Spectroscopy Reveals a Correlation between Infrared Spectrum and Oligomer Size
• Analytical Time-Resolved Studies Using Photochemical Triggering Methods
• Resolution of Trp near UV CD spectra of calmodulin-domain peptide complexes into the 1La and 1Lb component spectra
• Fine-structure enhancement - assessment of a simple method to resolve overlapping bands in spectra
• The study of protein reactions by reaction-induced infrared difference spectroscopy
• ATP-induced phosphorylation of the sarcoplasmic reticulum Ca2+ ATPase: Molecular interpretation of infrared difference spectra
• Photorelease of carboxylic acids from 1-acyl-7-nitroindolines in aqueous solution: Rapid and efficient photorelease of L-glutamate [4]
• Side-chain protonation and mobility in the sarcoplasmic reticulum Ca 2+-ATPase: Implications for proton countertransport and Ca 2+ release
• Structural changes of the sarcoplasmic reticulum Ca2+-ATPase upon nucleotide binding studied by Fourier transform infrared spectroscopy
• Synthesis and characterisation of 13C and 15N isotopomers of a 1-acyl-7-nitroindoline
• Reaction-induced infrared difference spectroscopy for the study of protein reaction mechanisms
• The infrared absorption of amino acid side chains
• Structural dynamics of the Ca2+-ATPase studied by time-resolved infrared spectroscopy
• Analysis of a putative voltage-gated prokaryotic potassium channel
• Phosphoenzyme conversion of the sarcoplasmic reticulum Ca2+-ATPase. Molecular interpretation of infrared difference spectra
• Direct measurement of enzyme activity with infrared spectroscopy
• A dialysis accessory for attenuated total reflection infrared spectroscopy
• Infrared spectroscopy - Past and present
• P3-[2-(4-hydroxyphenyl)-2-oxo]ethyl ATP for the rapid activation of the Na+,K+-ATPase
• Substrate binding and enzyme function investigated by infrared spectroscopy
• Phosphoenolpyruvate and Mg2+ binding to pyruvate kinase monitored by infrared spectroscopy.
• Following enzyme activity with infrared spectroscopy.
• Influence of residue 22 on the folding, aggregation profile, and toxicity of the Alzheimer's amyloid beta peptide.
• Structural changes in the catalytic cycle of the Na+,K+-ATPase studied by infrared spectroscopy.
• Infrared spectrum of phosphoenol pyruvate: computational and experimental studies.
• Photochemistry and thermal decarboxylation of alpha-phosphoryloxy-p-nitrophenylacetates.
• Secondary structure transitions and aggregation induced in dynorphin neuropeptides by the detergent sodium dodecyl sulfate.
• Time-resolved infrared spectroscopy of pH-induced aggregation of the Alzheimer Abeta(1-28) peptide.
• Protonation and hydrogen bonding of Ca2+ site residues in the E2P phosphoenzyme intermediate of sarcoplasmic reticulum Ca2+-ATPase studied by a combination of infrared spectroscopy and electrostatic calculations.
• Studies of decarboxylation in photolysis of alpha-carboxy-2-nitrobenzyl (CNB) caged compounds.
• Proton paths in the sarcoplasmic reticulum Ca(2+) -ATPase.
• Infrared spectroscopy of proteins.
• Structures of the Ca2+-ATPase complexes with ATP, AMPPCP and AMPPNP. An FTIR study.
• Toward a general method to observe the phosphate groups of phosphoenzymes with infrared spectroscopy.
• Inhibition and partial reactions of Na,K-ATPase studied by Fourier transform infrared difference spectroscopy.
• FTIR studies on the bond properties of the aspartyl phosphate moiety of the Ca2+ -ATPase.
• Decarboxylation is a significant reaction pathway for photolabile calcium chelators and related compounds.
• Interactions of phosphate groups of ATP and Aspartyl phosphate with the sarcoplasmic reticulum Ca2+-ATPase: an FTIR study.
• Use of helper enzymes for ADP removal in infrared spectroscopic experiments: application to Ca2+-ATPase.
• Flash photolytic release of alcohols from photolabile carbamates or carbonates is rate-limited by decarboxylation of the photoproduct.
• P-O bond destabilization accelerates phosphoenzyme hydrolysis of sarcoplasmic reticulum Ca2+ -ATPase.
• Phosphorylation of the sarcoplasmic reticulum Ca(2+)-ATPase from ATP and ATP analogs studied by infrared spectroscopy.
• TNP-AMP binding to the sarcoplasmic reticulum Ca(2+)-ATPase studied by infrared spectroscopy.
• Light-induced changes in the chemical bond structure of light-harvesting complex II probed by FTIR spectroscopy.
• Photolytic cleavage of 1-(2-nitrophenyl)ethyl ethers involves two parallel pathways and product release is rate-limited by decomposition of a common hemiacetal intermediate.
• Mapping interactions between the Ca2+-ATPase and its substrate ATP with infrared spectroscopy.
• Characterization of a new caged proton capable of inducing large pH jumps.
• What vibrations tell us about proteins.
• Selective monitoring of 3 out of 50,000 protein vibrations.
• Mapping nucleotide binding site of calcium ATPase with IR spectroscopy: effects of ATP gamma-phosphate binding.
• Preparation of active enzyme samples for IR studies of Na+/K+-ATPase.
• Infrared spectroscopic signals arising from ligand binding and conformational changes in the catalytic cycle of sarcoplasmic reticulum calcium ATPase
• Ca2+ release from the phosphorylated and the unphosphorylated sarcoplasmic reticulurn Ca2+ ATpase results in parallel structural changes. An infrared spectroscopic study
• Molecular changes in the sarcoplasmic reticulum calcium ATPase during catalytic activity. A Fourier transform infrared (FTIR) study using photolysis of caged ATP to trigger the reaction cycle
• Changes of protein structure, nucleotide microenvironment, and Ca2+-binding states in the catalytic cycle of sarcoplasmic reticulum Ca2+-ATPase: investigation of nucleotide binding, phosphorylation and phosphoenzyme conversion by FTIR difference spectroscopy
• Time-resolved infrared spectroscopy of the Ca2+-ATPase. The enzyme at work
• Structural changes of sarcoplasmic reticulum Ca2+-ATPase upon Ca2+ binding studied by simultaneous measurement of infrared absorbance changes and changes of intrinsic protein fluorescence
• Specificity and symmetry in the interaction of calmodulin domains with the skeletal muscle myosin light chain kinase target sequence
• Fourier transform infrared (FTIR) spectroscopic investigation of the nicotinic acetylcholine receptor (nAChR) Investigation of agonist binding and receptor conformational changes by flash-induced release of 'caged' carbamoylcholine
• Time-resolved infrared spectroscopy of intermediates and products from photolysis of 1-(2-nitrophenyl)ethyl phosphates: Reaction of the 2- nitrosoacetophenone byproduct with thiols
• Photochemical Release of ATP from “Caged ATP” Studied by Time-Resolved Infrared Spectroscopy
• Force-Induced Structural Changes in Spider Silk Fibers Introduced by ATR-FTIR Spectroscopy
• Refining protein amide I spectrum simulations with simple yet effective electrostatic models for local wavenumbers and dipole derivative magnitudes
• Structural conversion of the spidroin C-terminal domain during assembly of spider silk fibers